MirGeneDB ID | Dan-Mir-989 |
Family name |
MIR-989 (all species) |
Seed |
GUGAUGU |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-989
Aga-Mir-989
Dlo-Mir-989
Dme-Mir-989
Dmo-Mir-989
Dsi-Mir-989
Dya-Mir-989
Gpa-Mir-989
Hme-Mir-989-P1
Hme-Mir-989-P2
Tca-Mir-989
|
Node of Origin (locus) |
Endopterygota
|
Node of Origin (family) |
Endopterygota
|
Genome context (Dana_caf1) |
scaffold_13266: 5886572-5886705 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AAAAAAAAAGAAACCAACGUUUCGGGAAGUGGCCACUACCUCGCAGUCACGUGAUGCCAAAAUGCAACUGACACUGAUCCGGAGAUGGUCCUCCAUCCUUGGGAUUAGUGUUAAUUUGUGUUUUUUUUAUUUGAAUAGUUCAUGUGAUGUGACGUAGUGGAACAUUCCUGGCGUUCCUAACAACAAAAAGUGAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70 80 90
AAAAAAAAAGAAACCAA----| UU - GG C G AUGCCAAAAUGCAACUGACACUGAUCCGGAGAUGGUCCUCCAU
CGU CGGGAA GU CCACUAC UCGCA UCACGUG \
GCG GUCCUU CA GGUGAUG AGUGU AGUGUAC C
CAGUGAAAAACAACAAUCCUU^ -- A A- C - UUGAUAAGUUUAUUUUUUUUGUGUUUAAUUGUGAUUAGGGUUC
190 180 170 160 150 140 130 120 110 100 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dan-Mir-989_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGCCACUACCUCGCAGUCACGUG -23
Get sequence
|
Mature sequence |
Dan-Mir-989_3p |
mirBase accession | None |
Sequence |
112- UGUGAUGUGACGUAGUGGAACA -134
Get sequence
|