MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-277-P10

Family name MIR-277 (all species)
Seed AAAUGCA
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-277-P11 
Orthologues Aae-Mir-277  Aga-Mir-277  Agr-Mir-277  Bge-Mir-277  Bko-Mir-277  Bpl-Mir-277  Cel-Mir-277  Dan-Mir-277  Dlo-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Eba-Mir-277  Efe-Mir-277  Esc-Mir-277  Gpa-Mir-277  Gsp-Mir-277  Hme-Mir-277  Hru-Mir-277  Isc-Mir-277  Lgi-Mir-277  Llo-Mir-277  Mgi-Mir-277  Mom-Mir-277  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Pau-Mir-277  Pca-Mir-277  Pcr-Mir-277  Pdu-Mir-277  Pve-Mir-277  Rph-Mir-277  Sne-Mir-277  Snu-Mir-277  Tca-Mir-277  Tur-Mir-277  War-Mir-277 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075496.1: 6772799-6772860 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUAAAAUAAGCAUUCACGUUCGAUUGUUCGUGCCAGGUAGUGUUUUUGCACGCGAUUAAUAAGAAACUGUAAAUGCAUUGGUCUGGUACGAAUUAUCUAAACGACUUCGUCAUUGUCUACG
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Structure
        10         20         30         40        50          
UAUAAAAUAAGCAUUCA-    C-   U            -|     U      CGCGAUUA 
                  CGUU  GAU GUUCGUGCCAGG UAGUGU UUUGCA        \
                  GCAA  CUA UAAGCAUGGUCU GUUACG AAAUGU        A
GCAUCUGUUACUGCUUCA    AU   U            G^     U      CAAAGAAU 
120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
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Star sequence

Ava-Mir-277-P10_5p*
mirBase accessionNone
Sequence 
0- GUGCCAGGUAGUGUUUUUGCA -21
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Mature sequence

Ava-Mir-277-P10_3p
mirBase accessionNone
Sequence 
40- UAAAUGCAUUGGUCUGGUACGA -62
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