MirGeneDB ID | Dma-Mir-277 |
Family name |
MIR-277 (all species) |
Seed |
AAAUGCA |
Species |
Large common water flea (Daphnia magna) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-277
Bge-Mir-277
Bpl-Mir-277
Cbr-Mir-277-P6a
Cbr-Mir-277-P6b
Cel-Mir-277
Cgi-Mir-277
Csc-Mir-277-P18a
Csc-Mir-277-P18b
Cte-Mir-277-P1
Cte-Mir-277-P2
Dan-Mir-277
Dme-Mir-277
Dmo-Mir-277
Dpu-Mir-277
Dsi-Mir-277
Dya-Mir-277
Efe-Mir-277
Esc-Mir-277
Hme-Mir-277
Isc-Mir-277
Lan-Mir-277-P3
Lan-Mir-277-P4
Lan-Mir-277-P5
Lgi-Mir-277
Lpo-Mir-277-P12
Lpo-Mir-277-P13
Lpo-Mir-277-P14
Lpo-Mir-277-P15
Lpo-Mir-277-P16
Lpo-Mir-277-P17
Npo-Mir-277
Obi-Mir-277
Ovu-Mir-277
Sme-Mir-277-P6a
Sme-Mir-277-P6b
Sme-Mir-277-P7a
Sme-Mir-277-P7b
Tca-Mir-277
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
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Genome context (DMA_ASM399081) |
NC_046180.1: 8461501-8461567 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UGAUACCCACUCCGGUUUCUGUCUGGAGUCCGUACCAGCAGUGCGUUUGCCUUUAAAUAUUUGCCAAAGGGGGUAAAUGCAUUCUUCUGGUAUCGUCACUCUUGUCAGUCAUUACGUCGCCAUUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGAUACCCACUCCGGUUU- UCU C- - C--| UUUAAAUAU
CUG GGAGU CG UACCAG AGUGCGUUUGCC U
GAC UCUCA GC AUGGUC UUACGUAAAUGG U
UUUUUACCGCUGCAUUACU UGU CU U UUC^ GGGAAACCG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Star sequence |
Dma-Mir-277_5p* |
mirBase accession | None |
Sequence |
0- CGUACCAGCAGUGCGUUUGCC -21
Get sequence
|
Mature sequence |
Dma-Mir-277_3p |
mirBase accession | None |
Sequence |
43- UAAAUGCAUUCUUCUGGUAUCGUC -67
Get sequence
|