MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-277-P8

Family name MIR-277 (all species)
Seed AAAUGCA
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-277a
Paralogues Gsa-Mir-277-P9 
Orthologues Aae-Mir-277  Aga-Mir-277  Agr-Mir-277  Bge-Mir-277  Bko-Mir-277  Bpl-Mir-277  Cel-Mir-277  Dan-Mir-277  Dlo-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Eba-Mir-277  Efe-Mir-277  Egr-Mir-277-P8  Esc-Mir-277  Gpa-Mir-277  Gsp-Mir-277  Hme-Mir-277  Hru-Mir-277  Isc-Mir-277  Lgi-Mir-277  Llo-Mir-277  Mgi-Mir-277  Mom-Mir-277  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Pau-Mir-277  Pca-Mir-277  Pcr-Mir-277  Pdu-Mir-277  Pve-Mir-277  Rph-Mir-277  Sma-Mir-277-P8  Sme-Mir-277-P8a  Sme-Mir-277-P8b  Sne-Mir-277  Snu-Mir-277  Tca-Mir-277  Tur-Mir-277  War-Mir-277 
Node of Origin (locus) Tricladida + Neodermata
Node of Origin (family) Protostomia
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006947706: 6212-6270 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAACGAAAAAAUGAUAAAUUUAUAUUUAUGAGCCAUUUCUUUGUGUUUGUAUUGAAAAUGUCUAUAAAUGCAAAGUAUCUGGUAUCAUAGAUUAGAGUUUAAACGUCAGAGUUGAAAA
Get precursor sequence
Structure
        10          20        30          40        50        
AAAACGAAAAAAUGAUA--     AU        -    UUU-|            UUGAA 
                   AAUUU  AUUUAUGA GCCA    CUUUGUGUUUGUA     \
                   UUGAG  UAGAUACU UGGU    GAAACGUAAAUAU     A
AAAAGUUGAGACUGCAAAU     AU        A    CUAU^            CUGUA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Gs
Star sequence

Gsa-Mir-277-P8_5p*
mirBase accessionMIMAT0035296
Sequence 
0- GAGCCAUUUCUUUGUGUUUGUA -22
Get sequence
Mature sequence

Gsa-Mir-277-P8_3p
mirBase accessionMIMAT0035297
Sequence 
35- UAAAUGCAAAGUAUCUGGUAUCAU -59
Get sequence