MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-277-P8

Family name MIR-277 (all species)
Seed AAAUGCA
Species Blood fluke (Schistosoma mansoni)
MiRBase ID
Paralogues Sma-Mir-277-P7 
Orthologues Aae-Mir-277  Aga-Mir-277  Agr-Mir-277  Bge-Mir-277  Bko-Mir-277  Bpl-Mir-277  Cel-Mir-277  Dan-Mir-277  Dlo-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Eba-Mir-277  Efe-Mir-277  Egr-Mir-277-P8  Esc-Mir-277  Gpa-Mir-277  Gsa-Mir-277-P8  Gsp-Mir-277  Hme-Mir-277  Hru-Mir-277  Isc-Mir-277  Lgi-Mir-277  Llo-Mir-277  Mgi-Mir-277  Mom-Mir-277  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Pau-Mir-277  Pca-Mir-277  Pcr-Mir-277  Pdu-Mir-277  Pve-Mir-277  Rph-Mir-277  Sme-Mir-277-P8a  Sme-Mir-277-P8b  Sne-Mir-277  Snu-Mir-277  Tca-Mir-277  Tur-Mir-277  War-Mir-277 
Node of Origin (locus) Tricladida + Neodermata
Node of Origin (family) Protostomia
Genome context
(GCA_000237925.5_SM_V9_genomic)		 HE601627.3: 36604484-36604621 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUACAUGCAAGUAACUGUGUUCAAGGUCAUGGGACGGAAAUGCUUACUUACAUAACUACUAGUAAUCUCUCAUCAGUAGAACUAAUAUGAAAAAAAAGCAUACAGGUUUACUGAUGAUGAAAUUACUCAUUAUUCAUUAUAUUGUAAAUGCAUUUUCUGGCCCGUAACUAAUACACAAUGAACACCUCUUAUAUCUG
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Structure
        10            20        30         40          50        60        70        80        90      
UGUACAUGCAAGUAACU----    UCAA   C     A   -      --|   UUACAUAACUACUAGUAAUCUCUCAUCAGUAGAACUAAUAUGAAAAA 
                     GUGU    GGU AUGGG CGG AAAUGC  UUAC                                               A
                     CACA    UCA UGCCC GUC UUUACG  AAUG                                               A
GUCUAUAUUCUCCACAAGUAA    UAA-   A     G   U      UA^   UUAUAUUACUUAUUACUCAUUAAAGUAGUAGUCAUUUGGACAUACGA 
      190       180        170       160       150       140       130       120       110       100
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Star sequence

Sma-Mir-277-P8_5p*
mirBase accessionNone
Sequence 
0- UGGGACGGAAAUGCUUACUU -20
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Mature sequence

Sma-Mir-277-P8_3p
mirBase accessionNone
Sequence 
115- UAAAUGCAUUUUCUGGCCCGUAA -138
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