| MirGeneDB ID | Sma-Mir-277-P7 |
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| Family name |
MIR-277 (all species) |
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| Seed |
AAAUGCA |
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| Species |
Blood fluke (Schistosoma mansoni) |
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| MiRBase ID |
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| Paralogues |
Sma-Mir-277-P8
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| Orthologues |
Aae-Mir-277
Aga-Mir-277
Agr-Mir-277
Bge-Mir-277
Bko-Mir-277
Bpl-Mir-277
Cel-Mir-277
Dan-Mir-277
Dlo-Mir-277
Dma-Mir-277
Dme-Mir-277
Dmo-Mir-277
Dpu-Mir-277
Dsi-Mir-277
Dya-Mir-277
Eba-Mir-277
Efe-Mir-277
Egr-Mir-277-P7
Esc-Mir-277
Gpa-Mir-277
Gsp-Mir-277
Hme-Mir-277
Hru-Mir-277
Isc-Mir-277
Lgi-Mir-277
Llo-Mir-277
Mgi-Mir-277
Mom-Mir-277
Npo-Mir-277
Obi-Mir-277
Ovu-Mir-277
Pau-Mir-277
Pca-Mir-277
Pcr-Mir-277
Pdu-Mir-277
Pve-Mir-277
Rph-Mir-277
Sme-Mir-277-P7a
Sme-Mir-277-P7b
Sne-Mir-277
Snu-Mir-277
Tca-Mir-277
Tur-Mir-277
War-Mir-277
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| Node of Origin (locus) |
Tricladida + Neodermata
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| Node of Origin (family) |
Protostomia
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Genome context
(GCA_000237925.5_SM_V9_genomic) |
HE601627.3: 36604211-36604356 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUAUGAUUGAUUAUAUUGUGUAUUGAAAAUUGGGCAGUUGGUGUAUUUCCACCUCAAAAUAAAAAAAAAACAAAAACAUAAUUCAACAAAGUUCGUUUUUAAUUUGAUCUAUUGAAAAAAAGAUCAAAUUAAAUGAAUUUAUGUUGAAUAUGUGAAAAUGCAUCAUCUACCCUAGAUAUCAAUACAUAGAACAUCAUUAUUUUGAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60 70 80 90 100
AUAUGAUUGAUUAUAUU-- AAAUU-| C U C CCUCAAAAUAAAAAAAAAACAAAAACAUAAUUCAACAAAGUUCGUUUUUA
GUGUAUUGA GGG AG UGGUGUAUUU CA \
UACAUAACU CCC UC ACUACGUAAA GU A
UAGUUUUAUUACUACAAGA AUAGAU^ A U A GUAUAAGUUGUAUUUAAGUAAAUUAAACUAGAAAAAAAGUUAUCUAGUUU
200 190 180 170 160 150 140 130 120 110 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Star sequence |
Sma-Mir-277-P7_5p* |
| mirBase accession | None |
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| Sequence |
0- UGGGCAGUUGGUGUAUUUCCA -21
Get sequence
|
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| Mature sequence |
Sma-Mir-277-P7_3p |
| mirBase accession | None |
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| Sequence |
124- AAAAUGCAUCAUCUACCCUAGA -146
Get sequence
|
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