MirGeneDB 3.0
MirGeneDB ID

Bko-Mir-277

Family name MIR-277 (all species)
Seed AAAUGCA
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues
Orthologues Aae-Mir-277  Aga-Mir-277  Agr-Mir-277  Ava-Mir-277-P10  Ava-Mir-277-P11  Bge-Mir-277  Bpl-Mir-277  Cbr-Mir-277-P6a  Cbr-Mir-277-P6b  Cel-Mir-277  Csc-Mir-277-P18a  Csc-Mir-277-P18b  Cte-Mir-277-P1  Cte-Mir-277-P2  Dan-Mir-277  Dgr-Mir-277-P19  Dgr-Mir-277-P20  Dgr-Mir-277-P21  Dlo-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Eba-Mir-277  Efe-Mir-277  Egr-Mir-277-P7  Egr-Mir-277-P8  Egr-Mir-277-P9  Esc-Mir-277  Gpa-Mir-277  Gsa-Mir-277-P8  Gsa-Mir-277-P9  Gsp-Mir-277  Hme-Mir-277  Hru-Mir-277  Isc-Mir-277  Lan-Mir-277-P3  Lan-Mir-277-P4  Lan-Mir-277-P5  Lgi-Mir-277  Llo-Mir-277  Lpo-Mir-277-P12  Lpo-Mir-277-P13  Lpo-Mir-277-P14  Lpo-Mir-277-P15  Lpo-Mir-277-P16  Lpo-Mir-277-P17  Mgi-Mir-277  Mom-Mir-277  Npo-Mir-277  Obi-Mir-277  Ofu-Mir-277-P22  Ofu-Mir-277-P23  Ovu-Mir-277  Pau-Mir-277  Pca-Mir-277  Pcr-Mir-277  Pdu-Mir-277  Pve-Mir-277  Rph-Mir-277  Sma-Mir-277-P7  Sma-Mir-277-P8  Sme-Mir-277-P7a  Sme-Mir-277-P7b  Sme-Mir-277-P8a  Sme-Mir-277-P8b  Sne-Mir-277  Snu-Mir-277  Tca-Mir-277  Tur-Mir-277  War-Mir-277 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)		 PJRA01000048.1: 2654569-2654636 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUAACAUAUUUAAAUGGUAUUGGAACGAUCGUGCCUGAUAAUGUAUUUACAUUGAAAUUUAAUCACAAUAUUUGUAAAUGCAUUAGUCUGGCAUGGCUGCUCCAUGCUCUACUAACAACUAACAUUU
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Structure
        10           20        30        40         50        60   
ACUAACAUAUUUAAAUG---|   U   A  AU      U   -            UUGAAAUUUA 
                    GUAU GGA CG  CGUGCC GAU AAUGUAUUUACA          \
                    CGUA CCU GU  GUACGG CUG UUACGUAAAUGU          A
UUUACAAUCAACAAUCAUCU^   -   C  CG      U   A            UUAUAACACU 
      120       110        100        90        80        70
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
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Star sequence

Bko-Mir-277_5p*
mirBase accessionNone
Sequence 
0- CGUGCCUGAUAAUGUAUUUACA -22
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Mature sequence

Bko-Mir-277_3p
mirBase accessionNone
Sequence 
45- UAAAUGCAUUAGUCUGGCAUGGC -68
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