MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-277-P8a

Family name MIR-277 (all species)
Seed AAAUGCA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-277a
Paralogues Sme-Mir-277-P7a  Sme-Mir-277-P7b  Sme-Mir-277-P8b 
Orthologues Aae-Mir-277  Aga-Mir-277  Agr-Mir-277  Bge-Mir-277  Bko-Mir-277  Bpl-Mir-277  Cel-Mir-277  Dan-Mir-277  Dlo-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Eba-Mir-277  Efe-Mir-277  Egr-Mir-277-P8  Esc-Mir-277  Gpa-Mir-277  Gsa-Mir-277-P8  Gsp-Mir-277  Hme-Mir-277  Hru-Mir-277  Isc-Mir-277  Lgi-Mir-277  Llo-Mir-277  Mgi-Mir-277  Mom-Mir-277  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Pau-Mir-277  Pca-Mir-277  Pcr-Mir-277  Pdu-Mir-277  Pve-Mir-277  Rph-Mir-277  Sma-Mir-277-P8  Sne-Mir-277  Snu-Mir-277  Tca-Mir-277  Tur-Mir-277  War-Mir-277 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000140_dd_Smes_g4_140: 654964-655022 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-277-P8a)		 Mir-277-P8a NNSW01000140_dd_Smes_g4_140: 654964-655022 [-] UCSC Ensembl
Mir-277-P7a NNSW01000140_dd_Smes_g4_140: 655258-655315 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAUAGUAAGAUGGUAAACUGUUUUCUUUACGUAUUCGUUGGAGCAUUUUUACAAACAAAAUGUAUAAAUGCACUAUCGGAUAUGACAUAGAUACAGUUUAAUUCUCAGCAUAUAUAU
Get precursor sequence
Structure
        10          20        30         40        50         
AAAAUAGUAAGAUGGUA--|     UU   UUA-        U   A      U  CAAAC 
                   AACUGU  UCU    CGUAUUCG UGG GCAUUU UA     \
                   UUGACA  AGA    GUAUAGGC AUC CGUAAA AU     A
UAUAUAUACGACUCUUAAU^     U-   UACA        U   A      U  GUAAA 
       110       100         90        80        70        60
Deep sequencing
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CommentThere are multliple Drosha cuts on the 5p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-277-P8a_5p*
mirBase accessionMIMAT0012119
Sequence 
0- ACGUAUUCGUUGGAGCAUUUUUA -23
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Mature sequence

Sme-Mir-277-P8a_3p
mirBase accessionMIMAT0004007
Sequence 
36- UAAAUGCACUAUCGGAUAUGACA -59
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