MirGeneDB ID | Isc-Mir-277 |
Family name |
MIR-277 (all species) |
Seed |
AAAUGCA |
Species |
Deer tick (Ixodes scapularis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-277
Bge-Mir-277
Bpl-Mir-277
Cbr-Mir-277-P6a
Cbr-Mir-277-P6b
Cel-Mir-277
Cgi-Mir-277
Csc-Mir-277-P18a
Csc-Mir-277-P18b
Cte-Mir-277-P1
Cte-Mir-277-P2
Dan-Mir-277
Dma-Mir-277
Dme-Mir-277
Dmo-Mir-277
Dpu-Mir-277
Dsi-Mir-277
Dya-Mir-277
Efe-Mir-277
Esc-Mir-277
Hme-Mir-277
Lan-Mir-277-P3
Lan-Mir-277-P4
Lan-Mir-277-P5
Lgi-Mir-277
Lpo-Mir-277-P12
Lpo-Mir-277-P13
Lpo-Mir-277-P14
Lpo-Mir-277-P15
Lpo-Mir-277-P16
Lpo-Mir-277-P17
Npo-Mir-277
Obi-Mir-277
Ovu-Mir-277
Sme-Mir-277-P6a
Sme-Mir-277-P6b
Sme-Mir-277-P7a
Sme-Mir-277-P7b
Tca-Mir-277
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (IscaWI) |
DS891538: 51143-51205 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUUUAUCCUGGCUCAGCGCGCGGGUGGCUUCGUUCCAGUGUUGCAUUUACAAUGUGACGUAGCGAUGGCUGUAAAUGCAUUAUCUGGAAUGCAAGGCGUCCGCGCCCGCUCUCCUCCUCCGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUUUAUCCUGGCUCAGC- GU G - UGU-| AUGUGACG
GCGCGG G CUU CGUUCCAG UGCAUUUACA U
CGCGCC C GAA GUAAGGUC ACGUAAAUGU A
CCGCCUCCUCCUCUCGCC UG G C UAUU^ CGGUAGCG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Al |
Mi |
Mi |
Mi |
Sa |
Sa |
Sa |
Sa |
To |
|
|
|
|
|
|
|
|
|
|
Star sequence |
Isc-Mir-277_5p* |
mirBase accession | None |
Sequence |
0- CGUUCCAGUGUUGCAUUUACA -21
Get sequence
|
Mature sequence |
Isc-Mir-277_3p |
mirBase accession | None |
Sequence |
41- UAAAUGCAUUAUCUGGAAUGCA -63
Get sequence
|