MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-277-P9

Family name MIR-277 (all species)
Seed AAAUGCA
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-277b
Paralogues Gsa-Mir-277-P8 
Orthologues Aae-Mir-277  Aga-Mir-277  Agr-Mir-277  Bge-Mir-277  Bko-Mir-277  Bpl-Mir-277  Cel-Mir-277  Dan-Mir-277  Dlo-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Eba-Mir-277  Efe-Mir-277  Egr-Mir-277-P9  Esc-Mir-277  Gpa-Mir-277  Gsp-Mir-277  Hme-Mir-277  Hru-Mir-277  Isc-Mir-277  Lgi-Mir-277  Llo-Mir-277  Mgi-Mir-277  Mom-Mir-277  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Pau-Mir-277  Pca-Mir-277  Pcr-Mir-277  Pdu-Mir-277  Pve-Mir-277  Rph-Mir-277  Sne-Mir-277  Snu-Mir-277  Tca-Mir-277  Tur-Mir-277  War-Mir-277 
Node of Origin (locus) Neodermata
Node of Origin (family) Protostomia
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006952241: 4154-4223 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAAGGAUUUGGGUGUUGGAUAUUCUGAUUAUAGACUCUACAUGUAUUUCUAUAACAGGGUCAUAAGUGCCACAAUAUAAAUGCAUGUUUUUGUCUAUACUCGAAUAUCUAGAAGCGUCUUUUUAAAGUG
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Structure
        10           20        30         40        50        60    
GGAAGGAUUUGGGUGUU---|       U  U       UCU-          C  UAACAGGGUCA 
                    GGAUAUUC GA UAUAGAC    ACAUGUAUUU UA           \
                    UCUAUAAG CU AUAUCUG    UGUACGUAAA AU           U
GUGAAAUUUUUCUGCGAAGA^       -  C       UUUU          U  AACACCGUGAA 
.       120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Gs
Star sequence

Gsa-Mir-277-P9_5p*
mirBase accessionMIMAT0035310
Sequence 
0- AUAGACUCUACAUGUAUUUCUA -22
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Mature sequence

Gsa-Mir-277-P9_3p
mirBase accessionMIMAT0035311
Sequence 
47- UAAAUGCAUGUUUUUGUCUAUAC -70
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