MirGeneDB ID | Egr-Mir-277-P9 |
Family name |
MIR-277 (all species) |
Seed |
AAAUGCA |
Species |
Hydatid worm (Echinococcus granulosus) |
MiRBase ID |
egr-mir-277b
|
Paralogues |
Egr-Mir-277-P7
Egr-Mir-277-P8
|
Orthologues |
Aae-Mir-277
Aga-Mir-277
Agr-Mir-277
Bge-Mir-277
Bko-Mir-277
Bpl-Mir-277
Cel-Mir-277
Dan-Mir-277
Dlo-Mir-277
Dma-Mir-277
Dme-Mir-277
Dmo-Mir-277
Dpu-Mir-277
Dsi-Mir-277
Dya-Mir-277
Eba-Mir-277
Efe-Mir-277
Esc-Mir-277
Gpa-Mir-277
Gsa-Mir-277-P9
Gsp-Mir-277
Hme-Mir-277
Hru-Mir-277
Isc-Mir-277
Lgi-Mir-277
Llo-Mir-277
Mgi-Mir-277
Mom-Mir-277
Npo-Mir-277
Obi-Mir-277
Ovu-Mir-277
Pau-Mir-277
Pca-Mir-277
Pcr-Mir-277
Pdu-Mir-277
Pve-Mir-277
Rph-Mir-277
Sne-Mir-277
Snu-Mir-277
Tca-Mir-277
Tur-Mir-277
War-Mir-277
|
Node of Origin (locus) |
Neodermata
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000012.1: 779202-779268 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUGCGAGCCUAAUUCUGUUGAGAUAGCACAGACCAGAUUUUGCAGUUUAUAACGCUACCCACUAAAAGAGUAUAAAUGCAAAAUAUCUGGUUAUGAGUUUCUGCAGAAGAACUGCUGAAGUGAAAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCUGCGAGCCUAAUUCUG-- - U A - --| G ACGCUACCC
UUG AGA AGC CA GACCAGAU UUUGCA UUUAUA \
GAC UCU UUG GU UUGGUCUA AAACGU AAAUAU A
GAAAGUGAAGUCGUCAAGAA G - A A UA^ - GAGAAAAUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Eg |
Eg |
Ev |
Ev |
Ad |
Fe |
Fe |
Hy |
Hy |
Hy |
Li |
Li |
Li |
Mi |
Mi |
Mi |
Po |
Po |
Po |
Po |
Po |
Po |
Po |
Pr |
Pr |
Pr |
Sm |
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Star sequence |
Egr-Mir-277-P9_5p* |
mirBase accession | MIMAT0041734 |
Sequence |
0- AGACCAGAUUUUGCAGUUUAUA -22
Get sequence
|
Mature sequence |
Egr-Mir-277-P9_3p |
mirBase accession | MIMAT0041735 |
Sequence |
43- UAAAUGCAAAAUAUCUGGUUAUGA -67
Get sequence
|