MirGeneDB ID | Efe-Mir-277 |
Family name |
MIR-277 (all species) |
Seed |
AAAUGCA |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-277
Bge-Mir-277
Bpl-Mir-277
Cbr-Mir-277-P6a
Cbr-Mir-277-P6b
Cel-Mir-277
Cgi-Mir-277
Csc-Mir-277-P18a
Csc-Mir-277-P18b
Cte-Mir-277-P1
Cte-Mir-277-P2
Dan-Mir-277
Dma-Mir-277
Dme-Mir-277
Dmo-Mir-277
Dpu-Mir-277
Dsi-Mir-277
Dya-Mir-277
Esc-Mir-277
Hme-Mir-277
Isc-Mir-277
Lan-Mir-277-P3
Lan-Mir-277-P4
Lan-Mir-277-P5
Lgi-Mir-277
Lpo-Mir-277-P12
Lpo-Mir-277-P13
Lpo-Mir-277-P14
Lpo-Mir-277-P15
Lpo-Mir-277-P16
Lpo-Mir-277-P17
Npo-Mir-277
Obi-Mir-277
Ovu-Mir-277
Sme-Mir-277-P6a
Sme-Mir-277-P6b
Sme-Mir-277-P7a
Sme-Mir-277-P7b
Tca-Mir-277
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (Efe_combined) |
Efet.01.213770: 120-185 [+]
|
Precursor (pre-Mir +30nt flank) |
GAAACUCUAAACAGACGGCCACGAAGGUAGAUUACCAGGAGUGCAUUUUACAUAUAUACUUCUGUUACGCUGUGUAAAUGCAUUUUCUGGUAAGUAACCUUGGUCGGCAGAGUCUACAAAAUCAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GAAACUCUAAACAGACG- - G AGA - -| AUAUAUACU
GCC AC AAGGU UUACCAG GAGUGCAUUU UAC U
CGG UG UUCCA AAUGGUC UUUACGUAAA GUG C
CUACUAAAACAUCUGAGA C G AUG U U^ UCGCAUUGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Efe-Mir-277_5p* |
mirBase accession | None |
Sequence |
0- AUUACCAGGAGUGCAUUUUACA -22
Get sequence
|
Mature sequence |
Efe-Mir-277_3p |
mirBase accession | None |
Sequence |
44- UAAAUGCAUUUUCUGGUAAGUA -66
Get sequence
|