MirGeneDB 3.0
MirGeneDB ID

Egr-Mir-277-P7

Family name MIR-277 (all species)
Seed AAAUGCA
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID egr-mir-4989
Paralogues Egr-Mir-277-P8  Egr-Mir-277-P9 
Orthologues Aae-Mir-277  Aga-Mir-277  Agr-Mir-277  Bge-Mir-277  Bko-Mir-277  Bpl-Mir-277  Cel-Mir-277  Dan-Mir-277  Dlo-Mir-277  Dma-Mir-277  Dme-Mir-277  Dmo-Mir-277  Dpu-Mir-277  Dsi-Mir-277  Dya-Mir-277  Eba-Mir-277  Efe-Mir-277  Esc-Mir-277  Gpa-Mir-277  Gsp-Mir-277  Hme-Mir-277  Hru-Mir-277  Isc-Mir-277  Lgi-Mir-277  Llo-Mir-277  Mgi-Mir-277  Mom-Mir-277  Npo-Mir-277  Obi-Mir-277  Ovu-Mir-277  Pau-Mir-277  Pca-Mir-277  Pcr-Mir-277  Pdu-Mir-277  Pve-Mir-277  Rph-Mir-277  Sma-Mir-277-P7  Sme-Mir-277-P7a  Sme-Mir-277-P7b  Sne-Mir-277  Snu-Mir-277  Tca-Mir-277  Tur-Mir-277  War-Mir-277 
Node of Origin (locus) Tricladida + Neodermata
Node of Origin (family) Protostomia
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)		 APAU02000001.1: 2377193-2377267 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-277-P7)		 Mir-277-P7 APAU02000001.1: 2377193-2377267 [+] UCSC Ensembl
Mir-277-P8 APAU02000001.1: 2377323-2377401 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGCAUGCUUGAGUGUAUGCACCGAACGCUGGGUAGUCGUUGCAUUUCCACACUGCUGCAAGGUAGCAGCUGAAAGAGGGUGAAAAUGCACCAACUAUCUGAGAUAUCGAUGCACUGAGCACCAGGAUGAUUUU
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Structure
        10          20        30         40        50        60      
AAAGCAUGCUUGAGUGUA--    C   ACG  -|      CGU       C  CACUGCUGCAAGGU 
                    UGCA CGA   CU GGGUAGU   UGCAUUU CA              A
                    ACGU GCU   GA UCUAUCA   ACGUAAA GU              G
UUUUAGUAGGACCACGAGUC    A   AUA  G^      ACC       A  GGGAGAAAGUCGAC 
   130       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Star sequence

Egr-Mir-277-P7_5p*
mirBase accessionMIMAT0037433
Sequence 
0- UGGGUAGUCGUUGCAUUUCCA -21
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Mature sequence

Egr-Mir-277-P7_3p
mirBase accessionMIMAT0020250
Sequence 
53- AAAAUGCACCAACUAUCUGAGA -75
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