Mir-277-P16

MirGeneDB ID

Lpo-Mir-277-P16

Family name

MIR-277 (all species)

Seed

AAAUGCA

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-277-P12 Lpo-Mir-277-P13 Lpo-Mir-277-P14 Lpo-Mir-277-P15 Lpo-Mir-277-P17

Orthologues

Aae-Mir-277 Aga-Mir-277 Agr-Mir-277 Bge-Mir-277 Bko-Mir-277 Bpl-Mir-277 Cel-Mir-277 Dan-Mir-277 Dlo-Mir-277 Dma-Mir-277 Dme-Mir-277 Dmo-Mir-277 Dpu-Mir-277 Dsi-Mir-277 Dya-Mir-277 Eba-Mir-277 Efe-Mir-277 Esc-Mir-277 Gpa-Mir-277 Gsp-Mir-277 Hme-Mir-277 Hru-Mir-277 Isc-Mir-277 Lgi-Mir-277 Llo-Mir-277 Mgi-Mir-277 Mom-Mir-277 Npo-Mir-277 Obi-Mir-277 Ovu-Mir-277 Pau-Mir-277 Pca-Mir-277 Pcr-Mir-277 Pdu-Mir-277 Pve-Mir-277 Rph-Mir-277 Sne-Mir-277 Snu-Mir-277 Tca-Mir-277 Tur-Mir-277 War-Mir-277

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013668400.1: 23780-23838 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CACUUUAACCCUGCAUGACCUACGUAGUCUCAUUCCAGCGGUGCGUUUACACGUCCUGAUACAUCUGUAAAUGCAUCAUCUGGAAUGAAGGUAUGACCUGGUCUUUUCUUCACUUACAC

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Structure

        10        20           30         40        50        
CACUUUAACCCUGCAUGA  UA--    G  -         C-|           CGUCCU 
                  CC    CGUA UC UCAUUCCAG  GGUGCGUUUACA      G
                  GG    GUAU GG AGUAAGGUC  CUACGUAAAUGU      A
CACAUUCACUUCUUUUCU  UCCA    -  A         UA^           CUACAU 
       110       100         90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-277-P16_5p*

mirBase accession

None

Sequence

0- CAUUCCAGCGGUGCGUUUACA -21

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Mature sequence

Lpo-Mir-277-P16_3p

mirBase accession

None

Sequence

37- UAAAUGCAUCAUCUGGAAUGAA -59

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