MirGeneDB ID | Bta-Mir-197 |
Family name |
MIR-197 (all species) |
Seed |
UCACCAC |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-197
|
Paralogues |
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Orthologues |
Cfa-Mir-197
Cja-Mir-197
Cpo-Mir-197
Dno-Mir-197
Eca-Mir-197
Hsa-Mir-197
Laf-Mir-197
Mml-Mir-197
Mmr-Mir-197
Ocu-Mir-197
Pab-Mir-197
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037330.1: 33850286-33850346 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCUGGAAUCUGUGCUCCGGGGGCUGUGCCGGGUAGAGAGGGCAGUGGGAGGUAAGAGCUCUUCACCCUUCACCACCUUCUCCACCCAGCAGGGCCAGCACACUUUGGUCUACGGCAUAU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGCUGGAAUCUGUGCUCCGGG--| G C A CA GA UAAGAG
GGCU UGC GGGU GAGAGGG GUGG GG \
CCGG ACG CCCA CUCUUCC CACU CC C
UAUACGGCAUCUGGUUUCACACGA^ G A C AC UC ACUUCU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Star sequence |
Bta-Mir-197_5p* |
mirBase accession | None |
Sequence |
0- CGGGUAGAGAGGGCAGUGGGAGG -23
Get sequence
|
Mature sequence |
Bta-Mir-197_3p |
mirBase accession | MIMAT0009257 |
Sequence |
39- UUCACCACCUUCUCCACCCAGC -61
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-197
|