MirGeneDB ID | Laf-Mir-197 |
---|---|
Family name | MIR-197 (all species) |
Seed | UCACCAC |
Species | African bush elephant (Loxodonta africana) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-197 Cfa-Mir-197 Cja-Mir-197 Cpo-Mir-197 Dno-Mir-197 Eca-Mir-197 Hsa-Mir-197 Mml-Mir-197 Mmr-Mir-197 Ocu-Mir-197 Pab-Mir-197 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010038.1: 54408124-54408184 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UUGCUGGAAUCUGUGCUCCAGGGGCUGUGCCGGGUAGAGAGGGCAGUGGGAGGUCAGAGCUCUUCACCCUUCACCACCUUCUCCACCCAGCAUGGCCGGCACACUUUGGUCUACGGCACAUGet precursor sequence |
Structure | 10 20 30 40 50 UUGCUGGAAUCUGUGCUCCAGG--| C A CA AGGUCAGAG GGCUGUGC GGGU GAGAGGG GUGGG \ CCGGUACG CCCA CUCUUCC CACUU C UACACGGCAUCUGGUUUCACACGG^ A C AC CCCACUUCU . 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Star sequence | Laf-Mir-197_5p* |
mirBase accession | None |
Sequence |
0- CGGGUAGAGAGGGCAGUGGG -20
Get sequence
|
Mature sequence | Laf-Mir-197_3p |
mirBase accession | None |
Sequence |
39- UUCACCACCUUCUCCACCCAGC -61
Get sequence
|