| MirGeneDB ID | Pab-Mir-197 |
|---|
| Family name |
MIR-197 (all species) |
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| Seed |
UCACCAC |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bta-Mir-197
Cfa-Mir-197
Cja-Mir-197
Cpo-Mir-197
Dno-Mir-197
Eca-Mir-197
Hsa-Mir-197
Laf-Mir-197
Mml-Mir-197
Mmr-Mir-197
Ocu-Mir-197
|
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| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 123138174-123138234 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUGCUGGAAUCUGUGCUCUGGGGGCUGUGCCGGGUAGAGAGGGCAGUGGGAGGUAAGAGCUCUUCACCCUUCACCACCUUCUCCACCCAGCAUGGCCGGCACACUUUGGUCUACGGCACAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGCUGGAAUCUGUGCUCUGGG--| C A CA GA UAAGAG
GGCUGUGC GGGU GAGAGGG GUGG GG \
CCGGUACG CCCA CUCUUCC CACU CC C
UACACGGCAUCUGGUUUCACACGG^ A C AC UC ACUUCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-197_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGGGUAGAGAGGGCAGUGGGAGG -23
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-197_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UUCACCACCUUCUCCACCCAGC -61
Get sequence
|
|---|
