| MirGeneDB ID | Cja-Mir-197 |
|---|---|
| Family name | MIR-197 (all species) |
| Seed | GGGUAGA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-197 Cfa-Mir-197 Cpo-Mir-197 Dno-Mir-197 Eca-Mir-197 Hsa-Mir-197 Laf-Mir-197 Mml-Mir-197 Mmr-Mir-197 Ocu-Mir-197 Pab-Mir-197 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021921.1: 144773041-144773101 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUGCUGGAAUCUGUGCUCCGGGGGCUGUGCCGGGUAGAGAGGGCAGUGGGAGGUAAGAGCUCUUCACCCUUCACCACCUUCUCCACCCAGCAUGGCCGGCACACUUUGGUCUACAGCACAUGet precursor sequence |
| Structure | 10 20 30 40 50 CUGCUGGAAUCUGUGCUCCGGG--| C A CA GA UAAGAG GGCUGUGC GGGU GAGAGGG GUGG GG \ CCGGUACG CCCA CUCUUCC CACU CC C UACACGACAUCUGGUUUCACACGG^ A C AC UC ACUUCU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Cja-Mir-197_5p |
| mirBase accession | None |
| Sequence |
0- CGGGUAGAGAGGGCAGUGGGAGG -23
Get sequence
|
| Co-mature sequence | Cja-Mir-197_3p |
| mirBase accession | None |
| Sequence |
39- UUCACCACCUUCUCCACCCAGC -61
Get sequence
|
