MirGeneDB ID | Eca-Mir-197 |
Family name |
MIR-197 (all species) |
Seed |
UCACCAC |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-197
|
Paralogues |
|
Orthologues |
Bta-Mir-197
Cfa-Mir-197
Cja-Mir-197
Cpo-Mir-197
Dno-Mir-197
Hsa-Mir-197
Laf-Mir-197
Mml-Mir-197
Mmr-Mir-197
Ocu-Mir-197
Pab-Mir-197
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_002863925.1_EquCab3.0) |
CM009152.1: 55117037-55117097 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCUGGAAUCUGUGCUCCGGGGGCUGUGCCGGGUAGAGAGGGCAGUGGGAGGUAAGAGCUCUUCACCCUUCACCACCUUCUCCACCCAGCAUGGCCGGCACACUUUGGUCUACGGCACAU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGCUGGAAUCUGUGCUCCGGG--| C A CA GA UAAGAG
GGCUGUGC GGGU GAGAGGG GUGG GG \
CCGGUACG CCCA CUCUUCC CACU CC C
UACACGGCAUCUGGUUUCACACGG^ A C AC UC ACUUCU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Eca-Mir-197_5p* |
mirBase accession | None |
Sequence |
0- CGGGUAGAGAGGGCAGUGGGAGG -23
Get sequence
|
Mature sequence |
Eca-Mir-197_3p |
mirBase accession | MIMAT0012959 |
Sequence |
39- UUCACCACCUUCUCCACCCAGC -61
Get sequence
|