MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-296

Family name MIR-296 (all species)
Seed GGGUUGG
Species Cow (Bos taurus)
MiRBase ID bta-mir-296
Paralogues
Orthologues Cfa-Mir-296  Cpo-Mir-296  Dno-Mir-296  Hsa-Mir-296  Mml-Mir-296  Mmu-Mir-296  Rno-Mir-296 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037340.1: 57550938-57550994 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGGAAAGUGACCAUGAAGGACCCUUCCGGAGGGCCCCCCCCAAUCCUGUUGUGCUUGGUUCAGAGGGUUGGGCGGAGGCUUUCCUGAAGGGUCUGAGAGAGCAGCACCCACAGGC
Get precursor sequence
Structure
        10          20        30        40         50       
UGUGGAAAGUGACCAUGAA--         C        C  -|        GUUGUGC 
                     GGACCCUUC GGAGGGCC CC CCCAAUCCU       U
                     UCUGGGAAG CCUUUCGG GG GGGUUGGGA       U
CGGACACCCACGACGAGAGAG         U        A  C^        GACUUGG 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThe cow is arm-switched and the Drosha cut is shifted -1 relative to the other mammals analyzed.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Star sequence

Bta-Mir-296_5p*

mirBase accessionMIMAT0026918
Sequence
0- GAGGGCCCCCCCCAAUCCUGU -21
Get sequence
Proposed targets TargetScanVert: bta-miR-296-5p
Mature sequence

Bta-Mir-296_3p

mirBase accessionMIMAT0009273
Sequence
35- AGGGUUGGGCGGAGGCUUUCCU -57
Get sequence
Proposed targets TargetScanVert: bta-miR-296-3p