MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-296

Family name MIR-296 (all species)
Seed GGGCCCC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-296  Cfa-Mir-296  Cpo-Mir-296  Dno-Mir-296  Eca-Mir-296  Hsa-Mir-296  Laf-Mir-296  Mml-Mir-296  Mmr-Mir-296  Mmu-Mir-296  Pab-Mir-296  Rno-Mir-296 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021919.1: 52135729-52135784 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUGGAAGGUGAGAGAAAGGACCCUUCCGGAGGGCCCCCCCUCAAUCCUGUUGUGCCUGAUUCAGAGGGUUGGGUGGAGGCUCUCCCGAAGGGCUCUAGAGAACACCGCACCCACA
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Structure
        10          20        30        40        50       
CAUGGAAGGUGAGAGAA--| GA      C        C  C         GUUGUGC 
                   AG  CCCUUC GGAGGGCC CC CUCAAUCCU       C
                   UC  GGGAAG CCUCUCGG GG GGGUUGGGA       U
ACACCCACGCCACAAGAGA^ UC      C        A  U         GACUUAG 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Cja-Mir-296_5p
mirBase accessionNone
Sequence 
0- AGGGCCCCCCCUCAAUCCUGU -21
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Star sequence

Cja-Mir-296_3p*
mirBase accessionNone
Sequence 
35- AGGGUUGGGUGGAGGCUCUCC -56
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