| MirGeneDB ID | Cja-Mir-296 |
|---|---|
| Family name | MIR-296 (all species) |
| Seed | GGGCCCC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-296 Cfa-Mir-296 Cpo-Mir-296 Dno-Mir-296 Eca-Mir-296 Hsa-Mir-296 Laf-Mir-296 Mml-Mir-296 Mmr-Mir-296 Mmu-Mir-296 Pab-Mir-296 Rno-Mir-296 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021919.1: 52135729-52135784 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CAUGGAAGGUGAGAGAAAGGACCCUUCCGGAGGGCCCCCCCUCAAUCCUGUUGUGCCUGAUUCAGAGGGUUGGGUGGAGGCUCUCCCGAAGGGCUCUAGAGAACACCGCACCCACAGet precursor sequence |
| Structure | 10 20 30 40 50 CAUGGAAGGUGAGAGAA--| GA C C C GUUGUGC AG CCCUUC GGAGGGCC CC CUCAAUCCU C UC GGGAAG CCUCUCGG GG GGGUUGGGA U ACACCCACGCCACAAGAGA^ UC C A U GACUUAG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Cja-Mir-296_5p |
| mirBase accession | None |
| Sequence |
0- AGGGCCCCCCCUCAAUCCUGU -21
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|
| Star sequence | Cja-Mir-296_3p* |
| mirBase accession | None |
| Sequence |
35- AGGGUUGGGUGGAGGCUCUCC -56
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|
