MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-296

Family name MIR-296 (all species)
Seed GGGCCCC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-296  Cfa-Mir-296  Cja-Mir-296  Cpo-Mir-296  Dno-Mir-296  Eca-Mir-296  Hsa-Mir-296  Laf-Mir-296  Mml-Mir-296  Mmr-Mir-296  Mmu-Mir-296  Rno-Mir-296 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054700.2: 63222977-63223032 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGGAGGUGAGAAGAAAGGACCCUUCCGGAGGGCCCCCCCUCAAUCCUGUUGUGCCUAAUUCAGAGGGUUGGGUGGAGGCUCUCCUGAAGGGCUCUGAAGAGCACUGCACCCACA
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Structure
        10          20        30        40        50       
GUGGGAGGUGAGAAGAA--| GA      C        C  C         GUUGUGC 
                   AG  CCCUUC GGAGGGCC CC CUCAAUCCU       C
                   UC  GGGAAG CCUCUCGG GG GGGUUGGGA       U
ACACCCACGUCACGAGAAG^ UC      U        A  U         GACUUAA 
    110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-296_5p (predicted)

mirBase accessionNone
Sequence
0- AGGGCCCCCCCUCAAUCCUGU -21
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Star sequence

Pab-Mir-296_3p*

mirBase accessionNone
Sequence
35- AGGGUUGGGUGGAGGCUCUCC -56
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