MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-296

Family name MIR-296 (all species)
Seed GGGCCCC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-296
Paralogues
Orthologues Bta-Mir-296  Cfa-Mir-296  Cja-Mir-296  Dno-Mir-296  Eca-Mir-296  Hsa-Mir-296  Laf-Mir-296  Mml-Mir-296  Mmr-Mir-296  Mmu-Mir-296  Pab-Mir-296  Rno-Mir-296 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_156: 1090312-1090367 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GUGGAAGGUGGCCGAACAGGGUUCUUCCAGAGGGCCCCCCCUCAAUCCUGUUGUGCUAAGUUCAGAGGGUUGGGUGGAGGCUCUCCAGAAGGACUCUACAGAGCUCCGCACCCACA
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Structure
        10          20        30        40        50       
GUGGAAGGUGGCCGAAC--|         CA       C  C         GUUGUGC 
                   AGGGUUCUUC  GAGGGCC CC CUCAAUCCU       U
                   UCUCAGGAAG  CUCUCGG GG GGGUUGGGA       A
ACACCCACGCCUCGAGACA^         AC       A  U         GACUUGA 
    110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-296_5p

mirBase accessionMIMAT0047138
Sequence
0- AGGGCCCCCCCUCAAUCCUGU -21
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Star sequence

Cpo-Mir-296_3p*

mirBase accessionMIMAT0047139
Sequence
35- AGGGUUGGGUGGAGGCUCUCC -56
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