MirGeneDB ID | Cpo-Mir-296 |
Family name |
MIR-296 (all species) |
Seed |
GGGCCCC |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-296
|
Paralogues |
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Orthologues |
Bta-Mir-296
Cfa-Mir-296
Cja-Mir-296
Dno-Mir-296
Eca-Mir-296
Hsa-Mir-296
Laf-Mir-296
Mml-Mir-296
Mmr-Mir-296
Mmu-Mir-296
Pab-Mir-296
Rno-Mir-296
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (cavPor3) |
scaffold_156: 1090312-1090367 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GUGGAAGGUGGCCGAACAGGGUUCUUCCAGAGGGCCCCCCCUCAAUCCUGUUGUGCUAAGUUCAGAGGGUUGGGUGGAGGCUCUCCAGAAGGACUCUACAGAGCUCCGCACCCACA
Get precursor sequence
|
Structure | 10 20 30 40 50
GUGGAAGGUGGCCGAAC--| CA C C GUUGUGC
AGGGUUCUUC GAGGGCC CC CUCAAUCCU U
UCUCAGGAAG CUCUCGG GG GGGUUGGGA A
ACACCCACGCCUCGAGACA^ AC A U GACUUGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Mature sequence |
Cpo-Mir-296_5p |
mirBase accession | MIMAT0047138 |
Sequence |
0- AGGGCCCCCCCUCAAUCCUGU -21
Get sequence
|
Star sequence |
Cpo-Mir-296_3p* |
mirBase accession | MIMAT0047139 |
Sequence |
35- AGGGUUGGGUGGAGGCUCUCC -56
Get sequence
|