| MirGeneDB ID | Cpo-Mir-296 |
|---|
| Family name |
MIR-296 (all species) |
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| Seed |
GGGCCCC |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-296
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-296
Cfa-Mir-296
Dno-Mir-296
Hsa-Mir-296
Mml-Mir-296
Mmu-Mir-296
Rno-Mir-296
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(cavPor3) |
scaffold_156: 1090312-1090367 [-]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
GUGGAAGGUGGCCGAACAGGGUUCUUCCAGAGGGCCCCCCCUCAAUCCUGUUGUGCUAAGUUCAGAGGGUUGGGUGGAGGCUCUCCAGAAGGACUCUACAGAGCUCCGCACCCACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUGGAAGGUGGCCGAAC--| CA C C GUUGUGC
AGGGUUCUUC GAGGGCC CC CUCAAUCCU U
UCUCAGGAAG CUCUCGG GG GGGUUGGGA A
ACACCCACGCCUCGAGACA^ AC A U GACUUGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Cpo-Mir-296_5p |
| mirBase accession | MIMAT0047138 |
|---|
| Sequence |
0- AGGGCCCCCCCUCAAUCCUGU -21
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-296_3p* |
| mirBase accession | MIMAT0047139 |
|---|
| Sequence |
35- AGGGUUGGGUGGAGGCUCUCC -56
Get sequence
|
|---|
