MirGeneDB ID | Cfa-Mir-296 |
Family name |
MIR-296 (all species) |
Seed |
AGGGCAC |
Species |
Dog (Canis familiaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bta-Mir-296
Cpo-Mir-296
Dno-Mir-296
Hsa-Mir-296
Mml-Mir-296
Mmu-Mir-296
Rno-Mir-296
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Node of Origin (locus) |
Eutheria
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Node of Origin (family) |
Eutheria
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Genome context (canFam3_add) |
chr24: 43570198-43570254 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
GGGUGAUAAUGAAGAUGAAGGGCUCUUCCGGAGGGCACCCCCCAAUCCUGUUGUGCUGGAUUCAGAGGGUUGGGUGGAGGCUUUCCUGAAGGGCUGGAGGAGCGCUGCGCCCACGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGUGAUAAUGAAGAUGAAG-- C AC -| GUUGUGC
GGCUCUUC GGAGGGC CC CCCAAUCCU U
UCGGGAAG CCUUUCG GG GGGUUGGGA G
GGGCACCCGCGUCGCGAGGAGG U GA U^ GACUUAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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3' NTU |
Unknown
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Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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Mature sequence |
Cfa-Mir-296_5p (predicted) |
mirBase accession | None |
Sequence |
0- GAGGGCACCCCCCAAUCCUGU -21
Get sequence
|
Star sequence |
Cfa-Mir-296_3p* (predicted) |
mirBase accession | None |
Sequence |
35- AGGGUUGGGUGGAGGCUUUCCU -57
Get sequence
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