MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-296

Family name MIR-296 (all species)
Seed AGGGCAC
Species Dog (Canis familiaris)
MiRBase ID
Paralogues
Orthologues Bta-Mir-296  Cpo-Mir-296  Dno-Mir-296  Hsa-Mir-296  Mml-Mir-296  Mmu-Mir-296  Rno-Mir-296 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)
chr24: 43570198-43570254 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGUGAUAAUGAAGAUGAAGGGCUCUUCCGGAGGGCACCCCCCAAUCCUGUUGUGCUGGAUUCAGAGGGUUGGGUGGAGGCUUUCCUGAAGGGCUGGAGGAGCGCUGCGCCCACGGG
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Structure
        10        20          30        40         50       
GGGUGAUAAUGAAGAUGAAG--        C       AC  -|        GUUGUGC 
                      GGCUCUUC GGAGGGC  CC CCCAAUCCU       U
                      UCGGGAAG CCUUUCG  GG GGGUUGGGA       G
GGGCACCCGCGUCGCGAGGAGG        U       GA  U^        GACUUAG 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-296_5p (predicted)

mirBase accessionNone
Sequence
0- GAGGGCACCCCCCAAUCCUGU -21
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Star sequence

Cfa-Mir-296_3p* (predicted)

mirBase accessionNone
Sequence
35- AGGGUUGGGUGGAGGCUUUCCU -57
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