MirGeneDB ID | Cja-Mir-151 |
---|---|
Family name | MIR-151 (all species) |
Seed | CGAGGAG |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-151 Cfa-Mir-151 Cpo-Mir-151 Dno-Mir-151 Eca-Mir-151 Ete-Mir-151 Hsa-Mir-151 Laf-Mir-151 Mml-Mir-151 Mmr-Mir-151 Mmu-Mir-151 Ocu-Mir-151 Pab-Mir-151 Rno-Mir-151 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021930.1: 55127169-55127225 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GCAAAGAUGACUAUAACACUUUUCCUGCCCUCGAGGAGCUCACAGUCUAGUAUGUCUCAUCCCCUACUAGACUGAAGCUCCUUGAGGACAGGGAUGGUCAUACUCACCUUGGUGUUGGet precursor sequence |
Structure | 10 20 30 40 50 GCAAAGAUGACUAUAAC--| U C CA UGUCU ACU UUCCUG CCUCGAGGAGCU CAGUCUAGUA C UGG AGGGAC GGAGUUCCUCGA GUCAGAUCAU A GUUGUGGUUCCACUCAUAC^ U A A- CCCCU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | CNNC at 3p(+17), UGUG in loop |
Mature sequence | Cja-Mir-151_5p |
mirBase accession | None |
Sequence |
0- UCGAGGAGCUCACAGUCUAGUA -22
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|
Co-mature sequence | Cja-Mir-151_3p |
mirBase accession | None |
Sequence |
36- CUAGACUGAAGCUCCUUGAGG -57
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|