MirGeneDB ID | Laf-Mir-151 |
Family name |
MIR-151 (all species) |
Seed |
CGAGGAG |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-151
Cfa-Mir-151
Cja-Mir-151
Cpo-Mir-151
Dno-Mir-151
Eca-Mir-151
Ete-Mir-151
Hsa-Mir-151
Mml-Mir-151
Mmr-Mir-151
Mmu-Mir-151
Ocu-Mir-151
Pab-Mir-151
Rno-Mir-151
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010035.1: 84809316-84809372 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCAAAGAUGACUGAGACACUCUUCCUGCCCUCGAGGAGCUCACAGUCUAGUAUGUGCCAUCCCCUACUAGACUGAAGCUCCUUGAGGACAGGGGUCGUCACACUCACCUCCGUGUCG
Get precursor sequence
|
Structure | 10 20 30 40 50
GCAAAGAUGACUGAGAC--| UC C CA UGUGC
AC UUCCUG CCUCGAGGAGCU CAGUCUAGUA C
UG GGGGAC GGAGUUCCUCGA GUCAGAUCAU A
GCUGUGCCUCCACUCACAC^ CU A A- CCCCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Laf-Mir-151_5p |
mirBase accession | None |
Sequence |
0- UCGAGGAGCUCACAGUCUAGUA -22
Get sequence
|
Star sequence |
Laf-Mir-151_3p* |
mirBase accession | None |
Sequence |
36- CUAGACUGAAGCUCCUUGAGG -57
Get sequence
|