MirGeneDB ID | Ocu-Mir-151 |
Family name |
MIR-151 (all species) |
Seed |
CGAGGAG |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
ocu-mir-151
|
Paralogues |
|
Orthologues |
Bta-Mir-151
Cfa-Mir-151
Cja-Mir-151
Cpo-Mir-151
Dno-Mir-151
Eca-Mir-151
Ete-Mir-151
Hsa-Mir-151
Laf-Mir-151
Mml-Mir-151
Mmr-Mir-151
Mmu-Mir-151
Pab-Mir-151
Rno-Mir-151
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
chrUn0252: 213334-213390 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAAAGACGCCUGAGCCACUGUUCCUGCCCUCGAGGAGCUCACAGUCUAGUAUGUCUCAUCCCCUACUAGACUGAAGCUCCUUGAGGACAGGGAUCGUCCUCCUCACCUCAGUGCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
ACAAAGACGCCUGAGCC--| U C CA UGUCU
AC GUUCCUG CCUCGAGGAGCU CAGUCUAGUA C
UG UAGGGAC GGAGUUCCUCGA GUCAGAUCAU A
GUCGUGACUCCACUCCUCC^ C A A- CCCCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The highest expression of the 3p arm has a 1 nt addition of an "A." However when seen the 3' offset reads suggests that this is the correct Drosha cut. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Ocu-Mir-151_5p |
mirBase accession | MIMAT0048265 |
Sequence |
0- UCGAGGAGCUCACAGUCUAGUA -22
Get sequence
|
Star sequence |
Ocu-Mir-151_3p* |
mirBase accession | MIMAT0048266 |
Sequence |
36- CUAGACUGAAGCUCCUUGAGG -57
Get sequence
|