MirGeneDB ID | Cja-Mir-32 |
---|---|
Family name | MIR-32 (all species) |
Seed | AUUGCAC |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | |
Orthologues | Aca-Mir-32 Ami-Mir-32 Bta-Mir-32 Cfa-Mir-32 Cli-Mir-32 Cmi-Mir-32 Cpi-Mir-32 Cpo-Mir-32 Dno-Mir-32 Eca-Mir-32 Ete-Mir-32 Gga-Mir-32 Gja-Mir-32 Hsa-Mir-32 Laf-Mir-32 Lch-Mir-32 Mdo-Mir-32 Mml-Mir-32 Mmr-Mir-32 Mmu-Mir-32 Mun-Mir-32 Neu-Mir-32 Oan-Mir-32 Ocu-Mir-32 Pab-Mir-32 Pbv-Mir-32 Rno-Mir-32 Sha-Mir-32 Spt-Mir-32 Sto-Mir-32 Tgu-Mir-32 Xla-Mir-32 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Gnathostomata |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 154462234-154462295 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AUGCUCCCAUUCUGCUUGCUCUGGUGGAGAUAUUGCACAUUACUAAGUUGCAUGUUGUCACGGCCUCAAUGCAAUUUAGUGUGUGUGAUAUUUUCACAUGAGUGCAUGCACACGGGUAUGGCGet precursor sequence |
Structure | 10 20 30 40 50 60 AUGCUCCCAUUCUGCUU--| UG UG U UGUUGUCA GCUC GUGGAGAUAU CACAU ACUAAGUUGCA \ UGAG CACUUUUAUA GUGUG UGAUUUAACGU C CGGUAUGGGCACACGUACG^ UA GU - AACUCCGG 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14), UGUG in loop |
Mature sequence | Cja-Mir-32_5p |
mirBase accession | None |
Sequence |
0- UAUUGCACAUUACUAAGUUGCA -22
Get sequence
|
Star sequence | Cja-Mir-32_3p* |
mirBase accession | None |
Sequence |
41- CAAUUUAGUGUGUGUGAUAUU -62
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