| MirGeneDB ID | Cja-Mir-544 |
|---|---|
| Family name | MIR-544 (all species) |
| Seed | CUUGUUA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-544 Cfa-Mir-544-P1 Cfa-Mir-544-P2 Dno-Mir-544 Eca-Mir-544 Ete-Mir-544 Hsa-Mir-544 Laf-Mir-544 Mml-Mir-544 Mmr-Mir-544 Mmu-Mir-544 Ocu-Mir-544 Pab-Mir-544 Rno-Mir-544 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 131863091-131863148 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAUGCUCCUAAGAUUUUCAUCACCUAGGGAUCUUGUUAAAAAGCAGAUUCUGAUUCAGGGACCAAGAUUCUGCAUUUUUAGCAAGUUCUCAAGUGAUGCUAAUGCCGCCGGUCUGUGGGet precursor sequence |
| Structure | 10 20 30 40 50 AAUGCUCCUAAGAUUUU---| CUA U - U GAUUCA CAUCAC GGGA CUUGUUAAAAA GCAGA UCU \ GUAGUG CUCU GAACGAUUUUU CGUCU AGA G GGUGUCUGGCCGCCGUAAUC^ AA- U A U ACCAGG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-544_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UCUUGUUAAAAAGCAGAUUCU -21
Get sequence
|
| Star sequence | Cja-Mir-544_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- AUUCUGCAUUUUUAGCAAGUUC -58
Get sequence
|
