MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-544

Family name MIR-544 (all species)
Seed CUUGUUA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-544  Cfa-Mir-544-P1  Cfa-Mir-544-P2  Dno-Mir-544  Eca-Mir-544  Ete-Mir-544  Hsa-Mir-544  Laf-Mir-544  Mml-Mir-544  Mmr-Mir-544  Mmu-Mir-544  Ocu-Mir-544  Pab-Mir-544  Rno-Mir-544 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131863091-131863148 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUGCUCCUAAGAUUUUCAUCACCUAGGGAUCUUGUUAAAAAGCAGAUUCUGAUUCAGGGACCAAGAUUCUGCAUUUUUAGCAAGUUCUCAAGUGAUGCUAAUGCCGCCGGUCUGUGG
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Structure
        10           20        30        40         50        
AAUGCUCCUAAGAUUUU---|     CUA    U           -     U   GAUUCA 
                    CAUCAC   GGGA CUUGUUAAAAA GCAGA UCU      \
                    GUAGUG   CUCU GAACGAUUUUU CGUCU AGA      G
GGUGUCUGGCCGCCGUAAUC^     AA-    U           A     U   ACCAGG 
      110       100         90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-544_5p (predicted)
mirBase accessionNone
Sequence 
0- UCUUGUUAAAAAGCAGAUUCU -21
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Star sequence

Cja-Mir-544_3p* (predicted)
mirBase accessionNone
Sequence 
36- AUUCUGCAUUUUUAGCAAGUUC -58
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