MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-544

Family name MIR-544 (all species)
Seed CUUGUUA
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-544  Cfa-Mir-544-P1  Cfa-Mir-544-P2  Cja-Mir-544  Dno-Mir-544  Eca-Mir-544  Ete-Mir-544  Hsa-Mir-544  Laf-Mir-544  Mml-Mir-544  Mmr-Mir-544  Mmu-Mir-544  Ocu-Mir-544  Rno-Mir-544 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105480677-105480734 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUGCUCCUAAGAUUUUCAUCACCUAGGGAUCUUGUUAAAAAGCAGAUUCUGAUUCAGGGACCAAGAUUCUGCAUUUUUAGCAAGUUCUCAAGUGAUGCUAAUACCGCCGGUCUGUGG
Get precursor sequence
Structure
        10           20        30        40         50        
AAUGCUCCUAAGAUUUU---|     CUA    U           -     U   GAUUCA 
                    CAUCAC   GGGA CUUGUUAAAAA GCAGA UCU      \
                    GUAGUG   CUCU GAACGAUUUUU CGUCU AGA      G
GGUGUCUGGCCGCCAUAAUC^     AA-    U           A     U   ACCAGG 
      110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Li Li
Mature sequence

Pab-Mir-544_5p
mirBase accessionNone
Sequence 
0- UCUUGUUAAAAAGCAGAUUCU -21
Get sequence
Star sequence

Pab-Mir-544_3p*
mirBase accessionNone
Sequence 
36- AUUCUGCAUUUUUAGCAAGUUC -58
Get sequence