| MirGeneDB ID | Ete-Mir-544 |
|---|
| Family name |
MIR-544 (all species) |
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| Seed |
UUGUUAA |
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| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bta-Mir-544
Cfa-Mir-544-P1
Cfa-Mir-544-P2
Cja-Mir-544
Dno-Mir-544
Eca-Mir-544
Hsa-Mir-544
Laf-Mir-544
Mml-Mir-544
Mmr-Mir-544
Mmu-Mir-544
Ocu-Mir-544
Pab-Mir-544
Rno-Mir-544
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
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Genome context
(echTel2) |
JH980297: 82292945-82293002 [-]
UCSC
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Precursor
(pre-Mir +30nt flank) |
AUGCUUCUAAGAUUUUAAUCACCUAGGGAUCUUGUUAAAAUGCAGAUUCUGAUUCAUGGGCCUGAGAUUCUGCAUUUUUAGCAAGCUCCCAAGUGAUGCUGAUGCUGCUUGGUCUGUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUGCUUCUAAGAUUUUA----| CUA U - U GAUUCA
AUCAC GGGA CUUGUUAAAA UGCAGA UCU U
UAGUG CCCU GAACGAUUUU ACGUCU AGA G
GUGUCUGGUUCGUCGUAGUCG^ AA- C U U GUCCGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ete-Mir-544_5p |
| mirBase accession | None |
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| Sequence |
0- CUUGUUAAAAUGCAGAUUCUGA -22
Get sequence
|
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| Star sequence |
Ete-Mir-544_3p* |
| mirBase accession | None |
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| Sequence |
36- AUUCUGCAUUUUUAGCAAGCUC -58
Get sequence
|
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