| MirGeneDB ID | Cja-Mir-670 |
|---|---|
| Family name | MIR-670 (all species) |
| Seed | UUCCUCA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-670 Cpo-Mir-670 Dno-Mir-670 Eca-Mir-670 Hsa-Mir-670 Laf-Mir-670 Mml-Mir-670 Mmr-Mir-670 Mmu-Mir-670 Ocu-Mir-670 Pab-Mir-670 Rno-Mir-670 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021925.1: 105342742-105342805 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGCUUCAUCCAGUUUAGGGGUGAACCUGAUGUCCCUGAGUGUAUGUGGCGAACCUGGAUUUGCCUUGGGUUUCCUCAUACUCAUUCAGGAGUGUCAGUUGCCCCUUCAUGCGACGUUGGAGAGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 UGCUUCAUCCAGUUUAG----| UG AC UC -- U C GGAUU GGG A CUGAUG CCUGAGU GUAUG GG GAACCU \ CCC U GACUGU GGACUUA CAUAC CC UUUGGG U CGAGAGGUUGCAGCGUACUUC^ GU -- GA CU U - UUCCG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-670_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GUCCCUGAGUGUAUGUGGCGAACCU -25
Get sequence
|
| Mature sequence | Cja-Mir-670_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UUUCCUCAUACUCAUUCAGGAGUGU -64
Get sequence
|
