Mir-670

MirGeneDB ID

Eca-Mir-670

Family name

MIR-670 (all species)

Seed

UUCCUCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-670

Paralogues

Orthologues

Bta-Mir-670 Cja-Mir-670 Cpo-Mir-670 Dno-Mir-670 Hsa-Mir-670 Laf-Mir-670 Mml-Mir-670 Mmr-Mir-670 Mmu-Mir-670 Ocu-Mir-670 Pab-Mir-670 Rno-Mir-670

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009159.1: 8541552-8541614 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-670)

Mir-670 CM009159.1: 8541552-8541614 [+] UCSC Ensembl
Mir-129-P1 CM009159.1: 8563208-8563271 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGCCGCAUCCGGUUUAGGGGUGGAUCUGACGUCCCUGAGUGUAUGUGGUGAACCUGAAUUUGCCUUGGGUUUCCUCAUAUUCAUUCAGGAGUGUCAGUUCCCCCUUCACUCACCGUUGGAGAA

Get precursor sequence

Structure

        10          20        30        40         50        60 
UGCCGCAUCCGGUUUAG--|  U   U      UC        U     - UG    UGAAUU 
                   GGG GGA CUGACG  CCUGAGUG AUGUG G  AACC      \
                   CCC CCU GACUGU  GGACUUAC UAUAC C  UUGG      U
AAGAGGUUGCCACUCACUU^  -   U      GA        U     U CU    GUUCCG 
 120       110        100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-670_5p* (predicted)

mirBase accession

MIMAT0013052

Sequence

0- GUCCCUGAGUGUAUGUGGUGAACC -24

Get sequence

Mature sequence

Eca-Mir-670_3p

mirBase accession

None

Sequence

39- UUUCCUCAUAUUCAUUCAGGAGUG -63

Get sequence