| MirGeneDB ID | Laf-Mir-670 |
|---|
| Family name |
MIR-670 (all species) |
|---|
| Seed |
UUCCUCA |
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| Species |
African bush elephant (Loxodonta africana) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-670
Cja-Mir-670
Cpo-Mir-670
Dno-Mir-670
Eca-Mir-670
Hsa-Mir-670
Mml-Mir-670
Mmr-Mir-670
Mmu-Mir-670
Ocu-Mir-670
Pab-Mir-670
Rno-Mir-670
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_000001905.1_Loxafr3.0) |
GL010048.1: 6092027-6092090 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGCCACGUGCAGUUCAGGGGUGGGUCUGACGUCCCUGAGUGUAUGCGGUGAACCUGAAUUUGCCUUGGGUUUCCUCAUACUCAUUCAGGAGUGUCAGUUCCCCCUUCACUCGUCGUUGGAGAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGCCACGUGCAGUUCAG--- U GU UC --| C U UGAAUU
GGG GG CUGACG CCUGAGU GUAUG GG GAACC \
CCC CC GACUGU GGACUUA CAUAC CC UUUGG U
CGAGAGGUUGCUGCUCACUU - UU GA CU^ U - GUUCCG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Laf-Mir-670_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GUCCCUGAGUGUAUGCGGUGAACC -24
Get sequence
|
|---|
| Mature sequence |
Laf-Mir-670_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- UUUCCUCAUACUCAUUCAGGAGUGU -64
Get sequence
|
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