MirGeneDB ID | Cja-Mir-676 |
---|---|
Family name | MIR-676 (all species) |
Seed | CGUCCUA |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | |
Orthologues | Cfa-Mir-676 Cpo-Mir-676 Dno-Mir-676 Eca-Mir-676 Hsa-Mir-676 Laf-Mir-676 Mml-Mir-676 Mmr-Mir-676 Mmu-Mir-676 Ocu-Mir-676 Pab-Mir-676 Rno-Mir-676 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 64195949-64196005 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UUCAUAUCAGAUCCUCACCUGAAUGCAUGACUCUUCAACCUCAGGACUUGCAGAAUUAGUGGAAUGCCGUCCUAAGGUUGUUGAGUUGUGCAUUUGUGGGCAUUUCAUCUCUAUGGAGet precursor sequence |
Structure | 10 20 30 40 50 UUCAUAUCAGAUCCUCA- -| UG UU C UU GAAUU CC UGAAUGCA ACUC CAACCU AGGAC GCA A GG GUUUACGU UGAG GUUGGA UCCUG CGU G AGGUAUCUCUACUUUACG U^ GU UU A C- AAGGU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Star sequence | Cja-Mir-676_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CUCUUCAACCUCAGGACUUGCA -22
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|
Mature sequence | Cja-Mir-676_3p |
mirBase accession | None |
Sequence |
36- CCGUCCUAAGGUUGUUGAGUU -57
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