MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-676

Family name MIR-676 (all species)
Seed CGUCCUU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-676
Paralogues
Orthologues Cfa-Mir-676  Cja-Mir-676  Dno-Mir-676  Eca-Mir-676  Hsa-Mir-676  Laf-Mir-676  Mml-Mir-676  Mmr-Mir-676  Mmu-Mir-676  Ocu-Mir-676  Pab-Mir-676  Rno-Mir-676 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_26: 27706144-27706198 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UCAUAUCAGAUCUCCACCUCAGUGCAUAACUCUUCAACCUGAGGACUCGCAGGGUAAAUGGAAUGCCGUCCUUUGGUUGUUGAGUUGUGCAUUUUUGGGUGUUUCAUCUCUACAG
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Structure
        10        20          30        40        50       
UCAUAUCAGAUCUCCACCUC--|           UU     U      UC   GGGUA 
                      AGUGCAUAACUC  CAACC GAGGAC  GCA     A
                      UUACGUGUUGAG  GUUGG UUCCUG  CGU     A
GACAUCUCUACUUUGUGGGUUU^           UU     U      C-   AAGGU 
   110       100        90        80        70         60
Deep sequencing
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CommentThe Drosha cut is +1 relative to the other mammals (excluding human which is a Group 1).
3' NTU Yes
MotifsNo
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-676_5p*

mirBase accessionMIMAT0047375
Sequence
0- UCUUCAACCUGAGGACUCGCA -21
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Mature sequence

Cpo-Mir-676_3p

mirBase accessionMIMAT0047376
Sequence
35- CCGUCCUUUGGUUGUUGAGU -55
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