MirGeneDB ID | Cja-Mir-760 |
Family name |
MIR-760 (all species) |
Seed |
GGCUCUG |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-760
Cpo-Mir-760
Dno-Mir-760
Eca-Mir-760
Ete-Mir-760
Hsa-Mir-760
Laf-Mir-760
Mml-Mir-760
Mmr-Mir-760
Mmu-Mir-760
Ocu-Mir-760
Pab-Mir-760
Rno-Mir-760
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021921.1: 128993303-128993360 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAGGAUGCCGCGGAGCGGGGCGCGUCGCCCCCCUCAGUCCACCAGAGCCCGGAUACCUCAGAAAUUCGGCUCUGGGUCUGUGGGGAGCGAAAUGCAACCCAAACCCCGUUUUUCUGA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAGGAUGCCGCGGAGC- G-| CG C U UCCA CGGAUACC
GG GCG UCGC CCCC CAG CCAGAGCC U
CC CGU AGCG GGGG GUC GGUCUCGG C
AGUCUUUUUGCCCCAAAC AA^ AA A U UG-- CUUAAAGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Cja-Mir-760_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CCCCUCAGUCCACCAGAGCCCGG -23
Get sequence
|
Mature sequence |
Cja-Mir-760_3p (predicted) |
mirBase accession | None |
Sequence |
37- CGGCUCUGGGUCUGUGGGGAG -58
Get sequence
|