MirGeneDB ID | Cja-Mir-877 |
Family name |
MIR-877 (all species) |
Seed |
UAGAGGA |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-877
Cfa-Mir-877
Ete-Mir-877
Hsa-Mir-877
Laf-Mir-877
Mml-Mir-877
Mmr-Mir-877
Mmu-Mir-877
Pab-Mir-877
Rno-Mir-877
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021918.1: 32630946-32631031 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUGACACAGCUGCCGAGAGGCUAGAGAAGGUAGAGGAGAUGGCGCAGGGGACACGGGCUAAAACUCGGGGGUUCCUGGGGCCCUCAGACAUGUGUCCUCUUCUCCCUCCUCCCAGGUGUAUGAGGAAUUGCGGGCCACUGGGGCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
GAUGACACAGCUGCCGAGAGGCUAGAGAA---| UA AU CGC CGGGCUAAAACUCGGGGGU
GG GAGGAG GG AGGGGACA \
CC CUCCUC CC UCUCCUGU U
ACGGGGUCACCGGGCGUUAAGGAGUAUGUGGA^ -- -- UCU GUACAGACUCCCGGGGUCC
140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
Comment | Mir-877 is a conserved mirtron cut at both ends by the spliceosome. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Cja-Mir-877_5p |
mirBase accession | None |
Sequence |
0- GUAGAGGAGAUGGCGCAGGGGACA -24
Get sequence
|
Star sequence |
Cja-Mir-877_3p* |
mirBase accession | None |
Sequence |
65- UCCUCUUCUCCCUCCUCCCAG -86
Get sequence
|