| MirGeneDB ID | Cja-Mir-877 |
|---|---|
| Family name | MIR-877 (all species) |
| Seed | UAGAGGA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-877 Cfa-Mir-877 Ete-Mir-877 Hsa-Mir-877 Laf-Mir-877 Mml-Mir-877 Mmr-Mir-877 Mmu-Mir-877 Pab-Mir-877 Rno-Mir-877 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021918.1: 32630946-32631031 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAUGACACAGCUGCCGAGAGGCUAGAGAAGGUAGAGGAGAUGGCGCAGGGGACACGGGCUAAAACUCGGGGGUUCCUGGGGCCCUCAGACAUGUGUCCUCUUCUCCCUCCUCCCAGGUGUAUGAGGAAUUGCGGGCCACUGGGGCAGet precursor sequence |
| Structure | 10 20 30 40 50 60 70 GAUGACACAGCUGCCGAGAGGCUAGAGAA---| UA AU CGC CGGGCUAAAACUCGGGGGU GG GAGGAG GG AGGGGACA \ CC CUCCUC CC UCUCCUGU U ACGGGGUCACCGGGCGUUAAGGAGUAUGUGGA^ -- -- UCU GUACAGACUCCCGGGGUCC 140 130 120 110 100 90 80 |
| Deep sequencing | |
| Comment | Mir-877 is a conserved mirtron cut at both ends by the spliceosome. |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Cja-Mir-877_5p |
| mirBase accession | None |
| Sequence |
0- GUAGAGGAGAUGGCGCAGGGGACA -24
Get sequence
|
| Star sequence | Cja-Mir-877_3p* |
| mirBase accession | None |
| Sequence |
65- UCCUCUUCUCCCUCCUCCCAG -86
Get sequence
|
