MirGeneDB ID | Ete-Mir-877 |
Family name |
MIR-877 (all species) |
Seed |
UAGAGGA |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
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Paralogues |
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Orthologues |
Bta-Mir-877
Cfa-Mir-877
Cja-Mir-877
Hsa-Mir-877
Laf-Mir-877
Mml-Mir-877
Mmr-Mir-877
Mmu-Mir-877
Pab-Mir-877
Rno-Mir-877
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980348: 10660639-10660723 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GACGACGCGGCUGCCGAGCGGCUGGAGAAGGUAGAGGAGAUGGCGCAGGGGACACGGGCGGAGACUGGGGCUGGCUGGGGUCCUCCAACAUGUGUCCUCUUCUCCCUCCUCCCAGGUGUAUGAGGAGUUGCGAGCCACAGGGGCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
GACGACGCGGCUGCCGA---------| G A A U A UGGCGC CGGGCGGAGACUGGGGCU
GCG CUGG GA GG AG GGAGA AGGGGACA G
UGU GACC CU CC UC CCUCU UCUCCUGU G
GCGGGGACACCGAGCGUUGAGGAGUA^ G - - - - ------ GUACAACCUCCUGGGGUC
140 130 120 110 100 90 80 |
Deep sequencing |
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|
Comment | Mir-877 is a conserved mirtron cut at both ends by the spliceosome. |
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ete-Mir-877_5p |
mirBase accession | None |
Sequence |
0- GUAGAGGAGAUGGCGCAGGGGACA -24
Get sequence
|
Star sequence |
Ete-Mir-877_3p* (predicted) |
mirBase accession | None |
Sequence |
64- UCCUCUUCUCCCUCCUCCCAG -85
Get sequence
|