MirGeneDB ID | Pab-Mir-877 |
Family name |
MIR-877 (all species) |
Seed |
UAGAGGA |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-877
Cfa-Mir-877
Cja-Mir-877
Ete-Mir-877
Hsa-Mir-877
Laf-Mir-877
Mml-Mir-877
Mmr-Mir-877
Mmu-Mir-877
Rno-Mir-877
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054684.2: 30638274-30638359 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUGACACAGCUGCUGAGAGGCUAGAGAAGGUAGAGGAGAUGGCGCAGGGGACACGGGCAAAGACUCGGGGGUUCCUGGGACCCUCAGACAUGUGUCCUCUUCUCCCUCCUCCCAGGUGUAUGAGGAAUUGCGGGCCACUGGGGCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
GAUGACACAGCUGCUGAGAGGCUAGAGAA---| UA AU CGC CGGGCAAAGACUCGGGGGU
GG GAGGAG GG AGGGGACA \
CC CUCCUC CC UCUCCUGU U
GCGGGGUCACCGGGCGUUAAGGAGUAUGUGGA^ -- -- UCU GUACAGACUCCCAGGGUCC
140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
Comment | Mir-877 is a conserved mirtron cut at both ends by the spliceosome. |
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Pab-Mir-877_5p |
mirBase accession | None |
Sequence |
0- GUAGAGGAGAUGGCGCAGGGGACA -24
Get sequence
|
Star sequence |
Pab-Mir-877_3p* (predicted) |
mirBase accession | None |
Sequence |
65- UCCUCUUCUCCCUCCUCCCAG -86
Get sequence
|