MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-885

Family name MIR-885 (all species)
Seed CCAUUAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-885  Cfa-Mir-885  Dno-Mir-885  Eca-Mir-885  Hsa-Mir-885  Laf-Mir-885  Mml-Mir-885  Mmr-Mir-885  Ocu-Mir-885  Pab-Mir-885 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021929.1: 61504170-61504223 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCCAGUCUGCUACUCGGCCCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGUGGGGUGUAGUGGAUAGAGCACGGGUUCAAGUCCCAGCUCCACCAC
Get precursor sequence
Structure
        10          20        30        40         50      
GGCCCAGUCUGCUACUC--|     CA    C           A  -        UCU 
                   GGCCCG  CUCU UCCAUUACACU CC CUGCCUCU   C
                   UUGGGC  GAGA AGGUGAUGUGG GG GACGGAGA   C
CACCACCUCGACCCUGAAC^     AC    U           -  U        GUA 
  110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Cja-Mir-885_5p

mirBase accessionNone
Sequence
0- UCCAUUACACUACCCUGCCUCU -22
Get sequence
Star sequence

Cja-Mir-885_3p* (predicted)

mirBase accessionNone
Sequence
32- AGGCAGUGGGGUGUAGUGGAUA -54
Get sequence