MirGeneDB ID | Ocu-Mir-885 |
Family name |
MIR-885 (all species) |
Seed |
CCAUUAC |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
ocu-mir-885
|
Paralogues |
|
Orthologues |
Bta-Mir-885
Cfa-Mir-885
Cja-Mir-885
Dno-Mir-885
Eca-Mir-885
Hsa-Mir-885
Laf-Mir-885
Mml-Mir-885
Mmr-Mir-885
Pab-Mir-885
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (oryCun2_add) |
chrUn0565: 60279-60332 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUCCGUGACUGCCGCUCGGCCCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGGGUGUAGUGGAUAGAGCACGGGUUCAAGUCCCGGCUCCGCCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCCGUGACUGCCGCUC--| CA C A - UCU
GGCCCG CUCU UCCAUUACACU CC CUGCCUCU C
UUGGGC GAGA AGGUGAUGUGG GG GACGGAGA C
CACCGCCUCGGCCCUGAAC^ AC U - C GUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ocu-Mir-885_5p |
mirBase accession | MIMAT0048579 |
Sequence |
0- UCCAUUACACUACCCUGCCUCU -22
Get sequence
|
Star sequence |
Ocu-Mir-885_3p* |
mirBase accession | MIMAT0048580 |
Sequence |
32- AGGCAGCGGGGUGUAGUGGAUA -54
Get sequence
|