| MirGeneDB ID | Pab-Mir-885 |
|---|
| Family name |
MIR-885 (all species) |
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| Seed |
GGCAGCG |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bta-Mir-885
Cfa-Mir-885
Cja-Mir-885
Dno-Mir-885
Eca-Mir-885
Hsa-Mir-885
Laf-Mir-885
Mml-Mir-885
Mmr-Mir-885
Ocu-Mir-885
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM068843.1: 68359523-68359576 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GGCCCAGUCUGCUACUCGGCCCGCACUCUCUCCAUUACACUACCCUGCCUCUUCUCCAUGAGAGGCAGCGGGGUGUAGUGGAUAGAGCACGGGUUCAAGUCCCGGCUCCACCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGCCCAGUCUGCUACUC--| CA C A - UCU
GGCCCG CUCU UCCAUUACACU CC CUGCCUCU C
UUGGGC GAGA AGGUGAUGUGG GG GACGGAGA C
CACCACCUCGGCCCUGAAC^ AC U - C GUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-885_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCCAUUACACUACCCUGCCUCU -22
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-885_3p |
| mirBase accession | None |
|---|
| Sequence |
32- AGGCAGCGGGGUGUAGUGGAUA -54
Get sequence
|
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