MirGeneDB ID | Cli-Mir-458-as |
Family name |
MIR-458 (all species) |
Seed |
UAGCUCU |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
|
Paralogues |
Cli-Mir-458
|
Orthologues |
Aca-Mir-458
Ami-Mir-458
Cpi-Mir-458
Dre-Mir-458
Gga-Mir-458
Gga-Mir-458-as
Gja-Mir-458
Gmo-Mir-458
Lch-Mir-458
Loc-Mir-458
Mal-Mir-458
Mun-Mir-458
Oan-Mir-458
Pbv-Mir-458
Spt-Mir-458
Tgu-Mir-458
Tni-Mir-458
Xtr-Mir-458
|
Node of Origin (locus) |
Neognathae
|
Node of Origin (family) |
Osteichthyes
|
Genome context (colLiv2) |
scaffold636: 126030-126087 [-]
|
Precursor (pre-Mir +30nt flank) |
CUUAGAUGCUGGUUUUCCGGUACAUAUGGCAGUACCAUUCAAAGAGCUAUGACAAUGAGACUGUUUAUAGCUCUGGAAAUGGCGCUGCCAUCUGCACCACGGUGCAGCGGCUCAUCCC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUAGAUGCUGGUUUUCC--| A U UA CAA CAAUG
GGU CA AUGGCAG CCAUU AGAGCUAUGA A
CCA GU UACCGUC GGUAA UCUCGAUAUU G
CCCUACUCGGCGACGUGGCA^ C C GC AGG UGUCA
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Cli-Mir-458-as_5p* |
mirBase accession | None |
Sequence |
0- AGUACCAUUCAAAGAGCUAUGA -22
Get sequence
|
Mature sequence |
Cli-Mir-458-as_3p |
mirBase accession | None |
Sequence |
36- AUAGCUCUGGAAAUGGCGCUGC -58
Get sequence
|