MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-458

Family name MIR-458 (all species)
Seed UAGCUCU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-458
Paralogues
Orthologues Aca-Mir-458  Cli-Mir-458  Cli-Mir-458-as  Cpi-Mir-458  Dre-Mir-458  Gga-Mir-458  Gga-Mir-458-as  Gja-Mir-458  Gmo-Mir-458  Lch-Mir-458  Loc-Mir-458  Mal-Mir-458  Mun-Mir-458  Oan-Mir-458  Pbv-Mir-458  Spt-Mir-458  Tgu-Mir-458  Tni-Mir-458  Xla-Mir-458-P1  Xla-Mir-458-P2  Xtr-Mir-458 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017713851.1: 12830884-12830941 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAGAACCUCUGCAUGCAUGGUGCAGAUGGCAGCGCCAUUUUCAGAGCUAUAAACAGUAUCAUUGUCAUAGCUCUUUGAAUGGUACUGCCAUAUGUACUGGAAAAUCAGCAUUUAUACU
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Structure
        10          20        30        40        50        
CAGAACCUCUGCAUGCAU--|     G       CG      UC        AAACAGU 
                    GGUGCA AUGGCAG  CCAUUU  AGAGCUAU       A
                    UCAUGU UACCGUC  GGUAAG  UCUCGAUA       U
UCAUAUUUACGACUAAAAGG^     A       AU      UU        CUGUUAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ami-Mir-458_5p* (predicted)

mirBase accessionNone
Sequence
0- AGCGCCAUUUUCAGAGCUAUAA -22
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Mature sequence

Ami-Mir-458_3p

mirBase accessionMIMAT0038290
Sequence
36- AUAGCUCUUUGAAUGGUACUGC -58
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