MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-458-P1

Family name MIR-458 (all species)
Seed UAGCUCU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-458-P2 
Orthologues Aca-Mir-458  Ami-Mir-458  Cli-Mir-458  Cpi-Mir-458  Dre-Mir-458  Gga-Mir-458  Gja-Mir-458  Gmo-Mir-458  Lch-Mir-458  Loc-Mir-458  Mal-Mir-458  Mun-Mir-458  Oan-Mir-458  Pbv-Mir-458  Spt-Mir-458  Tgu-Mir-458  Tni-Mir-458  Xtr-Mir-458 
Node of Origin (locus) X. laevis
Node of Origin (family) Osteichthyes
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030728.1: 37654349-37654406 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUUCACACUCACUUCAUGGUGCAGAUGGCAGCGCCAUUUUCCGAGCUAUAAACAGUAUCAUUGUCAUAGCUCUUUGAAUGGUACUACCAUAUGUGCUGAAAAAUCAGCGAGUGGAGC
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Structure
        10          20        30        40        50        
AGUUCACACUCACUUCAU--| UG  G    C  CG      UCC       AAACAGU 
                    GG  CA AUGG AG  CCAUUU   GAGCUAU       A
                    UC  GU UACC UC  GGUAAG   CUCGAUA       U
CGAGGUGAGCGACUAAAAAG^ GU  A    A  AU      UUU       CUGUUAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-458-P1_5p*
mirBase accessionNone
Sequence 
0- AGCGCCAUUUUCCGAGCUAUAA -22
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Mature sequence

Xla-Mir-458-P1_3p
mirBase accessionNone
Sequence 
36- AUAGCUCUUUGAAUGGUACUAC -58
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