| MirGeneDB ID | Xla-Mir-458-P1 |
|---|
| Family name |
MIR-458 (all species) |
|---|
| Seed |
UAGCUCU |
|---|
| Species |
African clawed frog (Xenopus laevis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Xla-Mir-458-P2
|
|---|
| Orthologues |
Aca-Mir-458
Ami-Mir-458
Cli-Mir-458
Cpi-Mir-458
Dre-Mir-458
Gga-Mir-458
Gja-Mir-458
Gmo-Mir-458
Lch-Mir-458
Loc-Mir-458
Mal-Mir-458
Mun-Mir-458
Oan-Mir-458
Pbv-Mir-458
Spt-Mir-458
Tgu-Mir-458
Tni-Mir-458
Xtr-Mir-458
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Osteichthyes
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030728.1: 37654349-37654406 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGUUCACACUCACUUCAUGGUGCAGAUGGCAGCGCCAUUUUCCGAGCUAUAAACAGUAUCAUUGUCAUAGCUCUUUGAAUGGUACUACCAUAUGUGCUGAAAAAUCAGCGAGUGGAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUUCACACUCACUUCAU--| UG G C CG UCC AAACAGU
GG CA AUGG AG CCAUUU GAGCUAU A
UC GU UACC UC GGUAAG CUCGAUA U
CGAGGUGAGCGACUAAAAAG^ GU A A AU UUU CUGUUAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Xla-Mir-458-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGCGCCAUUUUCCGAGCUAUAA -22
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-458-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
36- AUAGCUCUUUGAAUGGUACUAC -58
Get sequence
|
|---|
