MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-458

Family name MIR-458 (all species)
Seed UAGCUCU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-458
Paralogues
Orthologues Aca-Mir-458  Ami-Mir-458  Cli-Mir-458  Cli-Mir-458-as  Cpi-Mir-458  Dre-Mir-458  Gga-Mir-458  Gga-Mir-458-as  Gja-Mir-458  Lch-Mir-458  Loc-Mir-458  Mal-Mir-458  Mun-Mir-458  Oan-Mir-458  Pbv-Mir-458  Spt-Mir-458  Tgu-Mir-458  Tni-Mir-458  Xla-Mir-458-P1  Xla-Mir-458-P2  Xtr-Mir-458 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig148200: 34-92 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGCCCUGGGCCACUCUGUUCCCCAUGGUAGCGCCAUUUCCAGAGUUAUCAGUGAAUGAUGAUUUCAUAGCUCUUUAAAUGGUACUGCCACAGGCAUUCAACGACCAGCUUUGGAGGG
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Structure
        10        20          30        40        50         
GUGGCCCUGGGCCACUCUGUUC--| CA      CG      CC        CAGUGAAU 
                        CC  UGGUAG  CCAUUU  AGAGUUAU        \
                        GG  ACCGUC  GGUAAA  UCUCGAUA        G
GGGAGGUUUCGACCAGCAACUUAC^ AC      AU      UU        CUUUAGUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-458_5p*
mirBase accessionMIMAT0044010
Sequence 
0- AGCGCCAUUUCCAGAGUUAUCA -22
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Mature sequence

Gmo-Mir-458_3p
mirBase accessionMIMAT0044011
Sequence 
37- AUAGCUCUUUAAAUGGUACUGC -59
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