| MirGeneDB ID | Cpo-Mir-874 |
|---|
| Family name |
MIR-874 (all species) |
|---|
| Seed |
UGCCCUG |
|---|
| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-874
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-874
Cfa-Mir-874
Dno-Mir-874
Ete-Mir-874
Hsa-Mir-874
Mml-Mir-874
Mmu-Mir-874
Ocu-Mir-874
Rno-Mir-874
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(cavPor3) |
scaffold_17: 26200294-26200351 [-]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCUUUGGAUGAAUUUUUGGUGUUAGCCCUGCGGCCCCACGCACCAGGGUAAGAGAGACUCACUUCCUGCCCUGGCCCGAGGGACCGACUGGCUGGGCCUGCCUUCUGCCCAGCUCACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCUUUGGAUGAAUUUUU---| G CUG C A CA A GAGA
GGU UUAGCC CGG CCC CG CCAGGGUA GA C
CCG GGUCGG GCC GGG GC GGUCCCGU CU U
UCACUCGACCCGUCUUCCGU^ - UCA A A CC C UCAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Cpo-Mir-874_5p* |
| mirBase accession | MIMAT0047393 |
|---|
| Sequence |
0- CGGCCCCACGCACCAGGGUAAGA -23
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-874_3p |
| mirBase accession | MIMAT0047394 |
|---|
| Sequence |
35- CUGCCCUGGCCCGAGGGACCGAC -58
Get sequence
|
|---|
