MirGeneDB ID | Pab-Mir-874 |
---|---|
Family name | MIR-874 (all species) |
Seed | UGCCCUG |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | |
Orthologues | Bta-Mir-874 Cfa-Mir-874 Cja-Mir-874 Cpo-Mir-874 Dno-Mir-874 Eca-Mir-874 Ete-Mir-874 Hsa-Mir-874 Laf-Mir-874 Mml-Mir-874 Mmr-Mir-874 Mmu-Mir-874 Ocu-Mir-874 Rno-Mir-874 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054683.2: 146034193-146034252 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CCAUCGGAUGAAUUGUUGGUGUUAGCCCUGCGGCCCCACGCACCAGGGUAAGAGAGACUCUCGCUUCCUGCCCUGGCCCGAGGGACCGACUGGCUGGGCCUGCCUUCUGCCCAGCUCACCGet precursor sequence |
Structure | 10 20 30 40 50 CCAUCGGAUGAAUUGUU---| G CUG C A CA A GAGAC GGU UUAGCC CGG CCC CG CCAGGGUA GA U CCG GGUCGG GCC GGG GC GGUCCCGU CU C CCACUCGACCCGUCUUCCGU^ - UCA A A CC C UCGCU . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Star sequence | Pab-Mir-874_5p* |
mirBase accession | None |
Sequence |
0- CGGCCCCACGCACCAGGGUAAGA -23
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|
Mature sequence | Pab-Mir-874_3p |
mirBase accession | None |
Sequence |
37- CUGCCCUGGCCCGAGGGACCGAC -60
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