MirGeneDB ID | Dan-Mir-957 |
Family name |
MIR-957 (all species) |
Seed |
GAAACCG |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-957
Aga-Mir-957
Dme-Mir-957
Dmo-Mir-957
Dsi-Mir-957
Dya-Mir-957-P1
Dya-Mir-957-P2
Gpa-Mir-957
|
Node of Origin (locus) |
Diptera
|
Node of Origin (family) |
Diptera
|
Genome context (Dana_caf1) |
scaffold_13337: 22247699-22247766 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUAUAGUAAUAUAUACUGCCUACAAUGGCCCUUAGUUUUCGACGUGUUUUGGUGUGCAGGGGAGUUCUAUUCCGAUUGAAACCGUCCAAAACUGAGGCCAACUGUGAGGCGUGAGCAUCUAAAAAUUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUAUAGUAAUAUAUACU- - A-| C C U UG GUGCAGGGGA
GCCU ACA UGGCC UUAGUUUU GACG GUUU GU \
CGGA UGU ACCGG AGUCAAAA CUGC CAAA UA G
AUUAAAAAUCUACGAGUG G CA^ - C - GU GCCUUAUCUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Dan-Mir-957_5p* |
mirBase accession | None |
Sequence |
0- CUUAGUUUUCGACGUGUUUUGGU -23
Get sequence
|
Mature sequence |
Dan-Mir-957_3p |
mirBase accession | None |
Sequence |
46- UGAAACCGUCCAAAACUGAGGC -68
Get sequence
|